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Useful links

  • Docker Documentation - a wealth of info here. Note that we use Docker Community Edition, as you have to pay for the Enterprise Edition https://docs.docker.com/
  • An awesome tutorial/workshop on docker for bioinformatics https://github.com/PawseySC/bio-workshop-18
  • Template for your Dockerfile: http://biocontainers.pro/docs/developer-manual/biocotainers-dockerfile/
  • Some best practices: http://biocontainers.pro/docs/developer-manual/best-practices/
  • Search for example dockerfiles here (if you sort for automated builds repositories, they will have Dockerfiles, not all docker hub repositories have Dockerfiles listed): http://hub.docker.com/
  • Docker SDK library for running docker containers easily within python code. https://docker-py.readthedocs.io/en/stable/
  • GitHub

StaPH-B  •  2025

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