StaPH-B State Public Health Bioinformatics Group
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Training

Training Materials from previous workshops and seminars

September 2021 - SARS-CoV-2 Data Submissions

By: Sarah Schmedes

A general overview of the SARS-CoV-2 genomic data submission process.

September 2020 - NE Region SARS-CoV-2 Training

By: Joel Sevinsky

A workshop on performing SARS-CoV-2 analyses.

June 2020 - MTN Region SARS-CoV-2 Training

By: Joel Sevinsky

A workshop on performing SARS-CoV-2 analyses.

June 2020 - Intro to Sequence Similarity Searching for Public Health Bioinformatics

By: Joel Sevinsky

An AMD Academy 2020 webinar on using tools to identify sequence similarity.

June 2020 - SARS-CoV-2 Resources Webinar

By: Joel Sevinsky

A webinar on the multitude of resources available for SARS-CoV-2 sequencing and data sharing, with an emphasis on those resources most applicable to state public health laboratories.

March 2020 - Slack Training for Scientific Communication

By: Kelly Oakeson

A webinar on how to use Slack for effective communication within a scientific community.

February 2020 - AMR Detection Using NGS

By: Joel Sevinsky

A webinar examining the different algorithms and databases used for AMR detection, with an emphasis on CGE’s ResFinder and NCBI’s AMRFinderPlus.

January 2020 - Microbial Species ID Using ANI and Mash

By: Joel Sevinsky

A webinar discussing how bacterial species identification is conducted using NGS data.

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